ELN Network Services Informatics Services Microarray Analysis Pipeline  · 

Microarray Analysis Pipeline

Created by: M. Schmidberger , generated 2007/07/06 , last changed: 2007/07/06

The pipeline has been designed to automate standard working steps such as preprocessing, determination of differentially expressed genes or annotation.

Features:

• Systematic data management
• Standardized storage
• Standardized access and documentation
• Routine tasks
• Preprocessing:
  vsn, median polish, add-on
• Standards for quality control
  Residual plots, Boxplots
• Automation for efficiency
• Differential gene expression
• Overrepresentation analysis
• Supervised classification
• Communication with project partners
• Browsable results linked to public databases
• Reproducible and documented results

The pipeline was developed in cooperation with the "Computational Diagnostics Group" ot the University Regensburg: http://www-compdiag.uni-regensburg.de

Further questions should be addressed to : M. Hummel or M. Schmidberger